Variant report

Variant	rs4084580
Chromosome Location	chr9:73786253-73786254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10120526	0.95[EUR][1000 genomes]
rs11142739	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12005903	0.84[EUR][1000 genomes]
rs12344424	0.95[EUR][1000 genomes]
rs12344482	0.95[EUR][1000 genomes]
rs12345212	0.89[EUR][1000 genomes]
rs12553005	0.89[EUR][1000 genomes]
rs13285314	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13285637	0.85[EUR][1000 genomes]
rs13286390	0.84[EUR][1000 genomes]
rs13290512	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13295758	0.84[EUR][1000 genomes]
rs17056555	0.95[EUR][1000 genomes]
rs34984694	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35090567	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35748852	0.95[EUR][1000 genomes]
rs7862138	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7871760	0.95[EUR][1000 genomes]
rs7873451	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73784200-73786600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:73784400-73786600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:73785600-73786400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:73786200-73786400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:73786200-73786600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:73786200-73787200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:73786200-73787400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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