Variant report

Variant	rs35748852
Chromosome Location	chr9:73863622-73863623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73539789..73540480-chr9:73863378..73863879,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10120526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142739	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12005903	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12344424	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12344482	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345212	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12553005	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13284794	0.81[EUR][1000 genomes]
rs13285314	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13285637	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13286390	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13290512	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13295758	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1394308	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17056555	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34984694	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35090567	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4084580	0.95[EUR][1000 genomes]
rs7862138	1.00[EUR][1000 genomes]
rs7871760	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873451	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv430073	chr9:73825109-73869960	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430074	chr9:73825109-73870395	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73859400-73864600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:73859400-73864800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:73859800-73865400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73861000-73864600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:73861200-73865400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:73861600-73864400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:73861800-73864400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:73861800-73864600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:73861800-73864600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:73862000-73864400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:73862000-73864400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:73862000-73864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:73862000-73864600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:73862600-73864600	Weak transcription	Liver	Liver
15	chr9:73863600-73863800	Enhancers	Fetal Kidney	kidney
16	chr9:73863600-73864400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:73863600-73864800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:73863600-73864800	Enhancers	Fetal Lung	lung
19	chr9:73863600-73866200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links