Variant report

Variant	rs1394308
Chromosome Location	chr9:73915294-73915295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10120526	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11142739	0.85[EUR][1000 genomes]
rs12005903	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12344424	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12344482	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12345212	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12553005	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13285314	0.85[EUR][1000 genomes]
rs13285637	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13286390	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13290512	0.85[EUR][1000 genomes]
rs13295758	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1532803	0.81[ASN][1000 genomes]
rs17056555	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34984694	0.85[EUR][1000 genomes]
rs35090567	0.85[EUR][1000 genomes]
rs35748852	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7862138	0.85[EUR][1000 genomes]
rs7871760	0.85[EUR][1000 genomes]
rs7873451	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv614605	chr9:73887092-73915883	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv471311	chr9:73902148-73916953	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv528257	chr9:73907625-73915535	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv614606	chr9:73907625-73936166	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1042871	chr9:73912684-73941288	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv466419	chr9:73914369-73940190	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv614607	chr9:73914369-73940190	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73915200-73915800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links