Variant report
| Variant | rs13290512 |
|---|---|
| Chromosome Location | chr9:73828182-73828183 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10120526 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11142739 | 0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12005903 | 0.90[EUR][1000 genomes] |
| rs12344424 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12344482 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12345212 | 0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12553005 | 0.95[EUR][1000 genomes] |
| rs13284794 | 0.81[EUR][1000 genomes] |
| rs13285314 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13285637 | 0.90[EUR][1000 genomes] |
| rs13286390 | 0.90[EUR][1000 genomes] |
| rs13295758 | 0.90[EUR][1000 genomes] |
| rs1394308 | 0.85[EUR][1000 genomes] |
| rs17056555 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34984694 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs35090567 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs35748852 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4084580 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7862138 | 1.00[EUR][1000 genomes] |
| rs7871760 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7873451 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035505 | chr9:73709852-73934353 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv893442 | chr9:73778502-74115344 | Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv984559 | chr9:73789685-73831841 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv1052375 | chr9:73793681-73893133 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv540152 | chr9:73793681-73893133 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv430073 | chr9:73825109-73869960 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv430074 | chr9:73825109-73870395 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:73825000-73833000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
