Variant report

Variant	rs7871760
Chromosome Location	chr9:73864493-73864494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:73539689..73540473-chr9:73864229..73864817,3	MCF-7	breast:
2	chr9:73618048..73618591-chr9:73864438..73865164,2	MCF-7	breast:
3	chr9:73541049..73541656-chr9:73864349..73864905,2	K562	blood:
4	chr9:73616988..73617845-chr9:73864418..73864972,2	MCF-7	breast:
5	chr9:73539566..73540528-chr9:73864349..73865391,8	MCF-7	breast:
6	chr9:73617917..73618662-chr9:73864369..73865150,3	MCF-7	breast:
7	chr9:73254797..73256065-chr9:73864206..73865490,4	MCF-7	breast:
8	chr9:73539587..73540524-chr9:73864401..73865325,3	K562	blood:
9	chr9:73255235..73255857-chr9:73864357..73865338,4	K562	blood:
10	chr9:73254840..73255344-chr9:73864424..73865232,2	MCF-7	breast:
11	chr9:73864387..73865377-chr9:74330813..74331790,2	K562	blood:

No data

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10120526	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142739	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12005903	0.90[EUR][1000 genomes]
rs12344424	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12344482	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345212	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12553005	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13284794	0.81[EUR][1000 genomes]
rs13285314	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13285637	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13286390	0.90[EUR][1000 genomes]
rs13290512	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13295758	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1394308	0.85[EUR][1000 genomes]
rs17056555	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34984694	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35090567	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35748852	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4084580	0.95[EUR][1000 genomes]
rs7862138	1.00[EUR][1000 genomes]
rs7873451	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv430073	chr9:73825109-73869960	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430074	chr9:73825109-73870395	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73859400-73864600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:73859400-73864800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:73859800-73865400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73861000-73864600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:73861200-73865400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:73861800-73864600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:73861800-73864600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:73862000-73864600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:73862600-73864600	Weak transcription	Liver	Liver
10	chr9:73863600-73864800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:73863600-73864800	Enhancers	Fetal Lung	lung
12	chr9:73863600-73866200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:73864200-73864800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:73864400-73864600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:73864400-73864800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:73864400-73864800	Enhancers	HUVEC	blood vessel
17	chr9:73864400-73865000	Enhancers	Fetal Kidney	kidney
18	chr9:73864400-73865400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:73864400-73865400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:73864400-73865400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr9:73864400-73866000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:73864400-73866400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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