Variant report

Variant	rs1535746
Chromosome Location	chr9:85883263-85883264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85833317..85835949-chr9:85882469..85885385,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf103-5	chr9:85882090-85885748	NONHSAT132734

Variant related genes	Relation type
ENSG00000229109	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10735562	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10780584	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10780586	0.85[AMR][1000 genomes]
rs10867972	0.87[EUR][1000 genomes]
rs11792963	0.87[EUR][1000 genomes]
rs1323777	0.90[EUR][1000 genomes]
rs1323780	0.87[EUR][1000 genomes]
rs1359169	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1547628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7872136	0.87[EUR][1000 genomes]
rs942281	0.95[EUR][1000 genomes]
rs9695210	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
4	chr9:85881400-85883800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:85881600-85889000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:85882000-85885000	Weak transcription	Spleen	Spleen
7	chr9:85882000-85886600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:85882000-85895800	Weak transcription	Fetal Kidney	kidney
9	chr9:85882000-85895800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:85882200-85883600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:85882200-85884800	Weak transcription	Left Ventricle	heart
12	chr9:85882200-85884800	Weak transcription	Psoas Muscle	Psoas
13	chr9:85882200-85884800	Weak transcription	Right Atrium	heart
14	chr9:85882200-85884800	Weak transcription	Right Ventricle	heart
15	chr9:85882200-85885000	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:85882200-85886600	Weak transcription	Adipose Nuclei	Adipose
17	chr9:85882200-85886600	Enhancers	Fetal Heart	heart
18	chr9:85882200-85887200	Enhancers	HUVEC	blood vessel
19	chr9:85882200-85889400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:85882200-85889400	Weak transcription	Fetal Stomach	stomach
21	chr9:85882200-85889800	Weak transcription	Pancreas	Pancrea
22	chr9:85882200-85895800	Weak transcription	Gastric	stomach
23	chr9:85882200-85895800	Weak transcription	Ovary	ovary
24	chr9:85882200-85896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:85882400-85886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:85882600-85883600	Weak transcription	HepG2	liver
27	chr9:85883000-85884800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:85883000-85884800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr9:85883000-85885000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:85883000-85886000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr9:85883000-85888600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:85883200-85883400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:85883200-85884800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:85883200-85895000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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