Variant report

Variant	rs1323780
Chromosome Location	chr9:85903383-85903384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10735562	0.85[EUR][1000 genomes]
rs10780584	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10867968	1.00[CEU][hapmap]
rs10867970	1.00[GIH][hapmap]
rs10867972	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867985	1.00[CHB][hapmap]
rs11792963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794508	1.00[CHB][hapmap]
rs12115310	1.00[GIH][hapmap]
rs12378433	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1323777	0.85[CEU][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs13286515	1.00[CHB][hapmap]
rs1359169	0.82[CEU][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs1535746	0.87[EUR][1000 genomes]
rs1547628	1.00[CEU][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs1570582	0.82[CEU][hapmap]
rs4877250	0.82[CEU][hapmap]
rs6559719	0.82[CEU][hapmap]
rs7034791	0.85[GIH][hapmap]
rs7869062	1.00[CHB][hapmap]
rs7872136	1.00[CEU][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942281	1.00[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs9695210	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
3	chr9:85884200-85912400	Weak transcription	HepG2	liver
4	chr9:85895000-85912800	Weak transcription	Fetal Brain Female	brain
5	chr9:85896000-85913600	Weak transcription	Psoas Muscle	Psoas
6	chr9:85896000-85919800	Weak transcription	Lung	lung
7	chr9:85896400-85912600	Weak transcription	Gastric	stomach
8	chr9:85896400-85913400	Weak transcription	Brain Germinal Matrix	brain
9	chr9:85896600-85913000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr9:85896800-85905400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:85896800-85906200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:85896800-85910800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:85896800-85922800	Weak transcription	Spleen	Spleen
14	chr9:85897000-85903800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:85897000-85905400	Weak transcription	Fetal Stomach	stomach
16	chr9:85897000-85912600	Weak transcription	Adipose Nuclei	Adipose
17	chr9:85897000-85912600	Weak transcription	Ovary	ovary
18	chr9:85897000-85912800	Weak transcription	Right Ventricle	heart
19	chr9:85897200-85912000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:85897200-85913000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr9:85897200-85919200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:85897200-85922000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr9:85897400-85914800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:85902400-85907800	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:85903000-85905400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links