Variant report

Variant	rs6559719
Chromosome Location	chr9:85915546-85915547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:55780966..55782713-chr9:85914150..85917090,2	MCF-7	breast:
2	chr9:85908596..85911105-chr9:85914154..85916205,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10867972	0.82[CEU][hapmap]
rs1323777	0.83[AMR][1000 genomes]
rs1323780	0.82[CEU][hapmap]
rs1359169	1.00[CEU][hapmap]
rs1547628	0.82[CEU][hapmap]
rs1570582	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4877250	0.82[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7872136	0.82[CEU][hapmap]
rs942281	0.82[CEU][hapmap]
rs9695210	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85896000-85919800	Weak transcription	Lung	lung
2	chr9:85896800-85922800	Weak transcription	Spleen	Spleen
3	chr9:85897200-85919200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:85897200-85922000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:85905800-85919000	Weak transcription	Fetal Stomach	stomach
6	chr9:85906600-85919400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:85906800-85919600	Weak transcription	Pancreas	Pancrea
8	chr9:85909000-85918400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:85909200-85928000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:85910400-85918000	Weak transcription	Fetal Brain Male	brain
11	chr9:85911400-85918800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:85912600-85919200	Weak transcription	Colonic Mucosa	Colon
13	chr9:85913600-85918800	Weak transcription	Ovary	ovary
14	chr9:85913600-85923000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:85913600-85932600	Weak transcription	Gastric	stomach
16	chr9:85913600-85937000	Weak transcription	Aorta	Aorta
17	chr9:85913800-85917400	Weak transcription	Fetal Brain Female	brain
18	chr9:85913800-85918800	Weak transcription	Brain Germinal Matrix	brain
19	chr9:85913800-85919400	Weak transcription	Right Ventricle	heart
20	chr9:85913800-85936400	Weak transcription	HepG2	liver
21	chr9:85914000-85915800	Weak transcription	Psoas Muscle	Psoas
22	chr9:85914000-85918800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr9:85914000-85919600	Weak transcription	Left Ventricle	heart
24	chr9:85914000-85925000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr9:85914200-85929400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:85914600-85918800	Weak transcription	Brain Anterior Caudate	brain
27	chr9:85914800-85919200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:85915000-85919200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:85915200-85919200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:85915200-85919200	Weak transcription	Fetal Kidney	kidney
31	chr9:85915200-85919400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:85915200-85920000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:85915400-85915800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr9:85915400-85916200	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:85915400-85919200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:85915400-85926200	Weak transcription	Hela-S3	cervix

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