Variant report

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10735562	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10780584	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10780586	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10867968	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs10867972	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11792963	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1323777	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1323780	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1359169	0.82[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1535746	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1547628	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1570582	0.82[CEU][hapmap]
rs4877250	0.82[CEU][hapmap]
rs6559719	0.82[CEU][hapmap]
rs7872136	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs942281	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
5	chr9:85876600-85881400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:85877200-85881400	Weak transcription	Ovary	ovary
7	chr9:85877800-85881400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:85879200-85881400	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr9:85879800-85881800	Active TSS	Fetal Heart	heart
10	chr9:85880000-85881400	Weak transcription	Psoas Muscle	Psoas
11	chr9:85880200-85881400	Weak transcription	Left Ventricle	heart
12	chr9:85880400-85882200	Flanking Active TSS	HUVEC	blood vessel
13	chr9:85880600-85881600	Active TSS	Right Atrium	heart
14	chr9:85880600-85883200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:85881200-85881600	Active TSS	Fetal Muscle Leg	muscle
16	chr9:85881200-85882000	Enhancers	Fetal Kidney	kidney
17	chr9:85881200-85882200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:85881200-85882200	Active TSS	Right Ventricle	heart
19	chr9:85881200-85882200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr9:85881200-85882600	Enhancers	HepG2	liver
21	chr9:85881200-85883000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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