Variant report

Variant	rs10867968
Chromosome Location	chr9:85881505-85881506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10735562	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10780584	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10780586	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10867972	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11792963	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1323777	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1323780	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1359169	0.82[CEU][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1535746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1547628	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1570582	0.82[CEU][hapmap]
rs4877250	0.85[CEU][hapmap]
rs7872136	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs942281	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9695210	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
4	chr9:85879800-85881800	Active TSS	Fetal Heart	heart
5	chr9:85880400-85882200	Flanking Active TSS	HUVEC	blood vessel
6	chr9:85880600-85881600	Active TSS	Right Atrium	heart
7	chr9:85880600-85883200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:85881200-85881600	Active TSS	Fetal Muscle Leg	muscle
9	chr9:85881200-85882000	Enhancers	Fetal Kidney	kidney
10	chr9:85881200-85882200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:85881200-85882200	Active TSS	Right Ventricle	heart
12	chr9:85881200-85882200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr9:85881200-85882600	Enhancers	HepG2	liver
14	chr9:85881200-85883000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:85881400-85881600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:85881400-85881600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr9:85881400-85881600	Active TSS	Psoas Muscle	Psoas
18	chr9:85881400-85881800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:85881400-85881800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:85881400-85881800	Enhancers	Fetal Lung	lung
21	chr9:85881400-85881800	Active TSS	Fetal Muscle Trunk	muscle
22	chr9:85881400-85881800	Enhancers	Stomach Mucosa	stomach
23	chr9:85881400-85882000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:85881400-85882000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:85881400-85882000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr9:85881400-85882200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:85881400-85882200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:85881400-85882200	Enhancers	Adipose Nuclei	Adipose
29	chr9:85881400-85882200	Enhancers	Colon Smooth Muscle	Colon
30	chr9:85881400-85882200	Enhancers	Esophagus	oesophagus
31	chr9:85881400-85882200	Enhancers	Gastric	stomach
32	chr9:85881400-85882200	Flanking Active TSS	Left Ventricle	heart
33	chr9:85881400-85882200	Enhancers	Ovary	ovary
34	chr9:85881400-85882200	Enhancers	Pancreas	Pancrea
35	chr9:85881400-85882200	Enhancers	Rectal Smooth Muscle	rectum
36	chr9:85881400-85882200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr9:85881400-85882400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:85881400-85882400	Enhancers	NH-A	brain
39	chr9:85881400-85882400	Enhancers	NHDF-Ad	bronchial
40	chr9:85881400-85882600	Enhancers	Stomach Smooth Muscle	stomach
41	chr9:85881400-85883000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr9:85881400-85883000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:85881400-85883800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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