Variant report

Variant	rs12378433
Chromosome Location	chr9:85928244-85928245
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10867972	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10867985	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11140019	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140023	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11792963	1.00[CHB][hapmap]
rs11794508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12377587	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12379032	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12380047	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1323780	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13284048	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13284867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13286515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13295597	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57251635	1.00[ASN][1000 genomes]
rs62563597	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034791	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs73463609	0.96[ASN][1000 genomes]
rs73481838	1.00[ASN][1000 genomes]
rs7856022	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7869062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85913600-85932600	Weak transcription	Gastric	stomach
2	chr9:85913600-85937000	Weak transcription	Aorta	Aorta
3	chr9:85913800-85936400	Weak transcription	HepG2	liver
4	chr9:85914200-85929400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:85920800-85938000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:85921000-85928400	Weak transcription	Fetal Brain Female	brain
7	chr9:85921200-85931600	Weak transcription	Brain Germinal Matrix	brain
8	chr9:85921400-85934400	Weak transcription	Pancreas	Pancrea
9	chr9:85921600-85930400	Weak transcription	Psoas Muscle	Psoas
10	chr9:85923000-85929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:85923200-85932000	Weak transcription	Ovary	ovary
12	chr9:85923400-85931800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:85923400-85943200	Weak transcription	Spleen	Spleen
14	chr9:85923600-85928400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:85923600-85942000	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:85923600-85960600	Weak transcription	Right Ventricle	heart
17	chr9:85925400-85928600	Weak transcription	Adipose Nuclei	Adipose
18	chr9:85925600-85928400	Strong transcription	Left Ventricle	heart
19	chr9:85926800-85928600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr9:85926800-85947600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr9:85928200-85928400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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