Variant report

Variant	rs12375992
Chromosome Location	chr9:85928470-85928471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10867985	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11140019	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140023	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11794508	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12377587	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12378433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379032	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12380047	0.86[EUR][1000 genomes]
rs13284048	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13284867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13286515	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13295597	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57251635	1.00[ASN][1000 genomes]
rs62563597	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034791	0.88[ASN][1000 genomes]
rs73463609	0.96[ASN][1000 genomes]
rs73481838	1.00[ASN][1000 genomes]
rs7856022	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7869062	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85913600-85932600	Weak transcription	Gastric	stomach
2	chr9:85913600-85937000	Weak transcription	Aorta	Aorta
3	chr9:85913800-85936400	Weak transcription	HepG2	liver
4	chr9:85914200-85929400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:85920800-85938000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:85921200-85931600	Weak transcription	Brain Germinal Matrix	brain
7	chr9:85921400-85934400	Weak transcription	Pancreas	Pancrea
8	chr9:85921600-85930400	Weak transcription	Psoas Muscle	Psoas
9	chr9:85923000-85929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:85923200-85932000	Weak transcription	Ovary	ovary
11	chr9:85923400-85931800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:85923400-85943200	Weak transcription	Spleen	Spleen
13	chr9:85923600-85942000	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:85923600-85960600	Weak transcription	Right Ventricle	heart
15	chr9:85925400-85928600	Weak transcription	Adipose Nuclei	Adipose
16	chr9:85926800-85928600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:85926800-85947600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr9:85928400-85928600	Genic enhancers	Left Ventricle	heart
19	chr9:85928400-85928600	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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