Variant report

Variant	rs11140023
Chromosome Location	chr9:85933560-85933561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10867985	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11140019	0.95[EUR][1000 genomes]
rs11794508	0.95[EUR][1000 genomes]
rs12375992	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12377587	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12378433	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12379032	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12380047	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13284048	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13284867	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13286515	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13295597	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62563597	0.87[EUR][1000 genomes]
rs7856022	0.96[EUR][1000 genomes]
rs7869062	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85913600-85937000	Weak transcription	Aorta	Aorta
2	chr9:85913800-85936400	Weak transcription	HepG2	liver
3	chr9:85920800-85938000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:85921400-85934400	Weak transcription	Pancreas	Pancrea
5	chr9:85923400-85943200	Weak transcription	Spleen	Spleen
6	chr9:85923600-85942000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:85923600-85960600	Weak transcription	Right Ventricle	heart
8	chr9:85926800-85947600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:85930800-85957800	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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