Variant report

Variant	rs12380047
Chromosome Location	chr9:85919661-85919662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10867985	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11140019	0.86[EUR][1000 genomes]
rs11140023	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11794508	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs12375992	0.86[EUR][1000 genomes]
rs12377587	0.81[EUR][1000 genomes]
rs12378433	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs12379032	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13284048	0.86[EUR][1000 genomes]
rs13284867	0.86[EUR][1000 genomes]
rs13286515	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs13294469	1.00[YRI][hapmap]
rs13295597	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62563597	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7856022	0.86[EUR][1000 genomes]
rs7869062	0.93[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85896000-85919800	Weak transcription	Lung	lung
2	chr9:85896800-85922800	Weak transcription	Spleen	Spleen
3	chr9:85897200-85922000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:85909200-85928000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:85913600-85923000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:85913600-85932600	Weak transcription	Gastric	stomach
7	chr9:85913600-85937000	Weak transcription	Aorta	Aorta
8	chr9:85913800-85936400	Weak transcription	HepG2	liver
9	chr9:85914000-85925000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:85914200-85929400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:85915200-85920000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:85915400-85926200	Weak transcription	Hela-S3	cervix
13	chr9:85916000-85920000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:85917400-85921000	Enhancers	Fetal Brain Female	brain
15	chr9:85918400-85920200	Enhancers	Brain Cingulate Gyrus	brain
16	chr9:85918600-85920800	Enhancers	Brain Substantia Nigra	brain
17	chr9:85918800-85920200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:85918800-85920200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:85918800-85920400	Enhancers	Brain Anterior Caudate	brain
20	chr9:85918800-85920400	Enhancers	Brain Hippocampus Middle	brain
21	chr9:85918800-85920600	Enhancers	Rectal Smooth Muscle	rectum
22	chr9:85918800-85920800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:85918800-85921200	Enhancers	Brain Germinal Matrix	brain
24	chr9:85918800-85923200	Enhancers	Ovary	ovary
25	chr9:85919000-85920400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:85919000-85920400	Enhancers	Colon Smooth Muscle	Colon
27	chr9:85919000-85920600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr9:85919000-85920600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:85919000-85921000	Enhancers	Fetal Heart	heart
30	chr9:85919000-85921600	Enhancers	Fetal Muscle Leg	muscle
31	chr9:85919000-85923200	Enhancers	Fetal Stomach	stomach
32	chr9:85919000-85923600	Enhancers	Adipose Nuclei	Adipose
33	chr9:85919200-85919800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:85919200-85920000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:85919200-85920200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:85919200-85920200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr9:85919200-85920200	Enhancers	Brain Angular Gyrus	brain
38	chr9:85919200-85920400	Enhancers	Fetal Kidney	kidney
39	chr9:85919200-85920400	Enhancers	Osteobl	bone
40	chr9:85919200-85920800	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr9:85919200-85921400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr9:85919200-85922600	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr9:85919400-85919800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
44	chr9:85919400-85919800	Weak transcription	Colonic Mucosa	Colon
45	chr9:85919400-85920200	Enhancers	NH-A	brain
46	chr9:85919400-85920400	Enhancers	Liver	Liver
47	chr9:85919400-85920600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:85919400-85920800	Enhancers	Right Ventricle	heart
49	chr9:85919600-85919800	Flanking Active TSS	Fetal Lung	lung
50	chr9:85919600-85919800	Flanking Active TSS	Stomach Smooth Muscle	stomach

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