Variant report

Variant	rs11794508
Chromosome Location	chr9:85929179-85929180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10867972	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10867985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11140019	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140023	0.95[EUR][1000 genomes]
rs11792963	1.00[CHB][hapmap]
rs12375992	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12377587	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12378433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379032	0.88[EUR][1000 genomes]
rs12380047	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1323780	1.00[CHB][hapmap]
rs13284048	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13284867	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13286515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13295597	1.00[CEU][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs57251635	1.00[ASN][1000 genomes]
rs62563597	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034791	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs73463609	0.96[ASN][1000 genomes]
rs73481838	1.00[ASN][1000 genomes]
rs7856022	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7869062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85913600-85932600	Weak transcription	Gastric	stomach
2	chr9:85913600-85937000	Weak transcription	Aorta	Aorta
3	chr9:85913800-85936400	Weak transcription	HepG2	liver
4	chr9:85914200-85929400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:85920800-85938000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:85921200-85931600	Weak transcription	Brain Germinal Matrix	brain
7	chr9:85921400-85934400	Weak transcription	Pancreas	Pancrea
8	chr9:85921600-85930400	Weak transcription	Psoas Muscle	Psoas
9	chr9:85923200-85932000	Weak transcription	Ovary	ovary
10	chr9:85923400-85931800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:85923400-85943200	Weak transcription	Spleen	Spleen
12	chr9:85923600-85942000	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:85923600-85960600	Weak transcription	Right Ventricle	heart
14	chr9:85926800-85947600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:85928600-85930200	Weak transcription	Left Ventricle	heart
16	chr9:85929000-85929200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:85929000-85929400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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