Variant report

Variant	rs1536042
Chromosome Location	chr6:33618361-33618362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33243087..33245254-chr6:33616753..33619186,2	K562	blood:
2	chr6:33602056..33605977-chr6:33617879..33621457,3	K562	blood:
3	chr6:33611230..33613955-chr6:33617910..33620269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235863	Chromatin interaction
ENSG00000231500	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12529825	1.00[JPT][hapmap]
rs16869178	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1755041	1.00[ASN][1000 genomes]
rs1755054	1.00[ASN][1000 genomes]
rs1794686	1.00[ASN][1000 genomes]
rs1794688	1.00[ASN][1000 genomes]
rs2068236	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395451	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4711333	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711334	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711335	0.89[EUR][1000 genomes]
rs4713647	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4713652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472990	1.00[ASN][1000 genomes]
rs480568	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs485623	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs535584	1.00[ASN][1000 genomes]
rs542056	1.00[ASN][1000 genomes]
rs542725	1.00[ASN][1000 genomes]
rs549719	1.00[ASN][1000 genomes]
rs55700437	1.00[ASN][1000 genomes]
rs557559	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs560218	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs561276	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs572824	1.00[ASN][1000 genomes]
rs6906810	1.00[ASN][1000 genomes]
rs71536195	1.00[ASN][1000 genomes]
rs7752930	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7757391	1.00[ASN][1000 genomes]
rs7757722	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7759154	1.00[ASN][1000 genomes]
rs7762843	1.00[JPT][hapmap]
rs7775313	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs806604	1.00[ASN][1000 genomes]
rs9368770	1.00[ASN][1000 genomes]
rs9689326	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33602400-33622600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:33602400-33636400	Weak transcription	HSMMtube	muscle
3	chr6:33602600-33619200	Weak transcription	NHDF-Ad	bronchial
4	chr6:33602600-33623400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:33602600-33624400	Weak transcription	Small Intestine	intestine
6	chr6:33602600-33625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:33602600-33625800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:33602600-33631600	Weak transcription	Osteobl	bone
9	chr6:33602800-33624400	Weak transcription	Pancreas	Pancrea
10	chr6:33603000-33624000	Weak transcription	HSMM	muscle
11	chr6:33603000-33628600	Weak transcription	Primary B cells from cord blood	blood
12	chr6:33603200-33619600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:33603400-33623000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:33603400-33626000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:33603400-33640400	Weak transcription	HUVEC	blood vessel
16	chr6:33603400-33641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:33604800-33623000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:33604800-33623400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:33605000-33624400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:33605000-33625400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:33605200-33624000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:33605200-33624400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:33605200-33636400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:33606600-33633000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:33606800-33626200	Weak transcription	A549	lung
26	chr6:33606800-33646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:33608200-33640800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:33609600-33623600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:33609800-33619400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:33610400-33623600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:33610400-33624000	Weak transcription	Fetal Lung	lung
32	chr6:33610400-33624000	Weak transcription	Stomach Mucosa	stomach
33	chr6:33610400-33626000	Weak transcription	K562	blood
34	chr6:33611000-33622200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:33611200-33619200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:33611400-33619400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:33611400-33623000	Strong transcription	Fetal Stomach	stomach
38	chr6:33611400-33626800	Weak transcription	Right Ventricle	heart
39	chr6:33611400-33643400	Weak transcription	Left Ventricle	heart
40	chr6:33611600-33618600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:33611600-33621200	Weak transcription	Esophagus	oesophagus
42	chr6:33611600-33622400	Weak transcription	Gastric	stomach
43	chr6:33611600-33623000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:33613000-33620200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:33613000-33659400	Strong transcription	Fetal Intestine Small	intestine
46	chr6:33613200-33618400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:33613200-33660400	Strong transcription	Thymus	Thymus
48	chr6:33613400-33635400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:33613600-33635000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr6:33614400-33620200	Strong transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links