Variant report

Variant	rs16869178
Chromosome Location	chr6:33512052-33512053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33511493..33513337-chr6:33513833..33516085,2	K562	blood:
2	chr6:33510727..33512644-chr6:33523375..33526015,2	MCF-7	breast:
3	chr6:33507165..33509178-chr6:33510190..33512427,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242014	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10484894	0.81[AMR][1000 genomes]
rs12529825	1.00[JPT][hapmap]
rs1536042	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1705000	1.00[ASN][1000 genomes]
rs17221716	1.00[ASN][1000 genomes]
rs1755041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755042	1.00[ASN][1000 genomes]
rs1755054	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1794686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1794688	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068236	1.00[ASN][1000 genomes]
rs2147655	1.00[ASN][1000 genomes]
rs2395451	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35433260	1.00[ASN][1000 genomes]
rs4711333	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4711334	1.00[ASN][1000 genomes]
rs4713647	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4713652	1.00[ASN][1000 genomes]
rs472990	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs480568	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485623	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535584	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542056	1.00[ASN][1000 genomes]
rs542725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55700437	1.00[ASN][1000 genomes]
rs557559	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560218	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs561276	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572824	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59572422	1.00[ASN][1000 genomes]
rs59841013	1.00[ASN][1000 genomes]
rs61687548	1.00[ASN][1000 genomes]
rs6900438	1.00[ASN][1000 genomes]
rs6900824	1.00[ASN][1000 genomes]
rs6906810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907978	1.00[ASN][1000 genomes]
rs6928341	1.00[ASN][1000 genomes]
rs6934454	1.00[ASN][1000 genomes]
rs71536195	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73741556	1.00[ASN][1000 genomes]
rs73741557	1.00[ASN][1000 genomes]
rs7742747	1.00[ASN][1000 genomes]
rs7743118	1.00[ASN][1000 genomes]
rs7752930	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7757391	1.00[ASN][1000 genomes]
rs7757722	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7759154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762843	1.00[JPT][hapmap]
rs7775313	1.00[ASN][1000 genomes]
rs806604	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806605	0.89[EUR][1000 genomes]
rs9368770	1.00[ASN][1000 genomes]
rs9689326	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33501600-33512800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:33511200-33515400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:33512000-33512400	Bivalent Enhancer	HepG2	liver
4	chr6:33512000-33516000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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