Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:33238564..33240970-chr6:33325772..33328532,3	MCF-7	breast:
2	chr6:33325008..33327752-chr6:33358204..33360429,2	K562	blood:
3	chr6:33324046..33327931-chr6:33328359..33332196,5	K562	blood:
4	chr6:33266017..33267860-chr6:33325857..33328088,3	MCF-7	breast:
5	chr6:33264242..33266619-chr6:33325685..33327636,2	MCF-7	breast:
6	chr6:33278819..33285671-chr6:33324194..33330069,12	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16869178	1.00[ASN][1000 genomes]
rs1705000	1.00[ASN][1000 genomes]
rs17221716	1.00[ASN][1000 genomes]
rs1755041	1.00[ASN][1000 genomes]
rs1755042	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1794686	1.00[ASN][1000 genomes]
rs1794688	1.00[ASN][1000 genomes]
rs35433260	1.00[ASN][1000 genomes]
rs55700437	1.00[ASN][1000 genomes]
rs59473078	1.00[ASN][1000 genomes]
rs59572422	1.00[ASN][1000 genomes]
rs61687548	1.00[ASN][1000 genomes]
rs6900438	1.00[ASN][1000 genomes]
rs6900824	1.00[ASN][1000 genomes]
rs6906691	1.00[ASN][1000 genomes]
rs6906810	1.00[ASN][1000 genomes]
rs6907034	1.00[ASN][1000 genomes]
rs6907978	1.00[ASN][1000 genomes]
rs6928341	1.00[ASN][1000 genomes]
rs6934454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71536195	1.00[ASN][1000 genomes]
rs73741556	1.00[ASN][1000 genomes]
rs73741557	1.00[ASN][1000 genomes]
rs7742747	1.00[ASN][1000 genomes]
rs7743118	1.00[ASN][1000 genomes]
rs9689326	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33322000-33332200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:33324000-33326400	Enhancers	K562	blood
3	chr6:33324400-33332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:33324600-33340200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33325800-33327800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:33326200-33329600	Weak transcription	Stomach Mucosa	stomach

Quick Search: