Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33306953..33310348-chr6:33311762..33315181,4	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16869178	1.00[ASN][1000 genomes]
rs1705000	1.00[ASN][1000 genomes]
rs17221716	1.00[ASN][1000 genomes]
rs1755041	1.00[ASN][1000 genomes]
rs1755042	1.00[ASN][1000 genomes]
rs1794686	1.00[ASN][1000 genomes]
rs1794688	1.00[ASN][1000 genomes]
rs35433260	1.00[ASN][1000 genomes]
rs55700437	1.00[ASN][1000 genomes]
rs59473078	1.00[ASN][1000 genomes]
rs59572422	1.00[ASN][1000 genomes]
rs59841013	1.00[ASN][1000 genomes]
rs61687548	1.00[ASN][1000 genomes]
rs6900438	1.00[ASN][1000 genomes]
rs6900824	1.00[ASN][1000 genomes]
rs6906691	1.00[ASN][1000 genomes]
rs6906810	1.00[ASN][1000 genomes]
rs6907034	1.00[ASN][1000 genomes]
rs6907978	1.00[ASN][1000 genomes]
rs6928341	1.00[ASN][1000 genomes]
rs6934454	1.00[ASN][1000 genomes]
rs71536195	1.00[ASN][1000 genomes]
rs73741556	1.00[ASN][1000 genomes]
rs73741557	1.00[ASN][1000 genomes]
rs7742747	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
3	nsv969386	chr6:33297665-33325116	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33291800-33317400	Weak transcription	Right Atrium	heart
2	chr6:33312600-33317800	Enhancers	Stomach Mucosa	stomach
3	chr6:33313200-33316800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:33313400-33315600	Weak transcription	K562	blood
5	chr6:33313400-33317600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:33313600-33315400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:33313800-33322000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:33314400-33315200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:33314400-33315200	Enhancers	Hela-S3	cervix
10	chr6:33315000-33315200	Enhancers	NHEK	skin

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