Variant report

Variant	rs35433260
Chromosome Location	chr6:33277926-33277927
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33259755..33275794-chr6:33276314..33291745,68	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237441	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16869178	1.00[ASN][1000 genomes]
rs1705000	1.00[ASN][1000 genomes]
rs17221716	1.00[ASN][1000 genomes]
rs1755041	1.00[ASN][1000 genomes]
rs1755042	1.00[ASN][1000 genomes]
rs1794686	1.00[ASN][1000 genomes]
rs1794688	1.00[ASN][1000 genomes]
rs55700437	1.00[ASN][1000 genomes]
rs59473078	1.00[ASN][1000 genomes]
rs59572422	1.00[ASN][1000 genomes]
rs59841013	1.00[ASN][1000 genomes]
rs61687548	1.00[ASN][1000 genomes]
rs6900438	1.00[ASN][1000 genomes]
rs6900824	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907978	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928341	1.00[ASN][1000 genomes]
rs6934454	1.00[ASN][1000 genomes]
rs71536195	1.00[ASN][1000 genomes]
rs73741556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73741557	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742747	1.00[ASN][1000 genomes]
rs7743118	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33268200-33279400	Strong transcription	Fetal Intestine Small	intestine
2	chr6:33268200-33279600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:33268200-33279800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:33268200-33279800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:33268200-33279800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33268200-33279800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:33268200-33279800	Weak transcription	Right Atrium	heart
8	chr6:33268200-33279800	Weak transcription	HSMMtube	muscle
9	chr6:33268400-33279600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:33268400-33279800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:33268600-33279600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:33268600-33279800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:33268600-33279800	Weak transcription	HSMM	muscle
14	chr6:33268800-33279400	Strong transcription	Fetal Thymus	thymus
15	chr6:33268800-33279600	Weak transcription	NH-A	brain
16	chr6:33269000-33279800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:33269000-33279800	Weak transcription	Fetal Heart	heart
18	chr6:33269000-33279800	Strong transcription	Fetal Stomach	stomach
19	chr6:33269200-33279000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:33269200-33279400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:33269200-33279600	Weak transcription	Fetal Brain Male	brain
22	chr6:33269400-33279200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:33269600-33278400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:33269600-33279400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:33269800-33279200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:33269800-33279400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:33270000-33279800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:33271600-33279400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:33271800-33279600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:33272200-33279600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:33272200-33279800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:33272600-33279600	Weak transcription	Fetal Lung	lung
33	chr6:33272600-33280000	Weak transcription	Brain Germinal Matrix	brain
34	chr6:33272800-33279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:33272800-33279600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:33272800-33279800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:33273000-33279600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:33273000-33279600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:33273000-33279800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:33273000-33279800	Weak transcription	HUVEC	blood vessel
41	chr6:33273000-33280000	Weak transcription	Fetal Brain Female	brain
42	chr6:33273000-33280000	Weak transcription	Psoas Muscle	Psoas
43	chr6:33273200-33279200	Weak transcription	Small Intestine	intestine
44	chr6:33273200-33280000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:33273200-33280200	Weak transcription	Aorta	Aorta
46	chr6:33273400-33278800	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:33273400-33279800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:33273400-33279800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:33273400-33279800	Weak transcription	Right Ventricle	heart
50	chr6:33273400-33280000	Weak transcription	Gastric	stomach

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