Variant report

Variant	rs9368770
Chromosome Location	chr6:33604258-33604259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33603324..33605214-chr6:33605377..33607191,2	MCF-7	breast:
2	chr6:33602974..33604582-chr6:33713029..33714944,2	MCF-7	breast:
3	chr6:33603701..33605977-chr6:33619846..33621457,2	K562	blood:
4	chr6:33600933..33606541-chr6:33607486..33611147,7	K562	blood:
5	chr6:33602056..33605977-chr6:33617879..33621457,3	K562	blood:
6	chr6:33602810..33605729-chr6:33607215..33609407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161896	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10947416	0.82[AFR][1000 genomes]
rs11754015	0.95[AFR][1000 genomes]
rs1536042	1.00[ASN][1000 genomes]
rs1536043	0.82[AFR][1000 genomes]
rs16869178	1.00[ASN][1000 genomes]
rs1755041	1.00[ASN][1000 genomes]
rs1755054	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1794686	1.00[ASN][1000 genomes]
rs1794688	1.00[ASN][1000 genomes]
rs2068236	1.00[ASN][1000 genomes]
rs2147655	1.00[ASN][1000 genomes]
rs2395451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711333	1.00[ASN][1000 genomes]
rs4711334	1.00[ASN][1000 genomes]
rs4713641	0.82[AFR][1000 genomes]
rs4713642	0.82[AFR][1000 genomes]
rs4713647	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713652	1.00[ASN][1000 genomes]
rs472990	1.00[ASN][1000 genomes]
rs480568	1.00[ASN][1000 genomes]
rs485623	1.00[ASN][1000 genomes]
rs494654	0.81[AFR][1000 genomes]
rs535584	1.00[ASN][1000 genomes]
rs542056	1.00[ASN][1000 genomes]
rs542725	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs549719	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55700437	1.00[ASN][1000 genomes]
rs557559	1.00[ASN][1000 genomes]
rs560218	1.00[ASN][1000 genomes]
rs561276	1.00[ASN][1000 genomes]
rs572824	1.00[ASN][1000 genomes]
rs580247	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6906810	1.00[ASN][1000 genomes]
rs71536195	1.00[ASN][1000 genomes]
rs7750812	0.85[AFR][1000 genomes]
rs7752930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759154	1.00[ASN][1000 genomes]
rs7768401	0.82[AFR][1000 genomes]
rs7769019	0.85[AFR][1000 genomes]
rs7775313	1.00[ASN][1000 genomes]
rs806604	1.00[ASN][1000 genomes]
rs9689326	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
3	esv1817557	chr6:33584788-33614127	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv1813933	chr6:33587443-33614127	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33602200-33605800	Enhancers	Primary T cells fromperipheralblood	blood
2	chr6:33602200-33608200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:33602400-33604800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:33602400-33605200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:33602400-33605200	Strong transcription	NHEK	skin
6	chr6:33602400-33607400	Weak transcription	Thymus	Thymus
7	chr6:33602400-33607600	Weak transcription	Primary T cells from cord blood	blood
8	chr6:33602400-33607600	Weak transcription	Colonic Mucosa	Colon
9	chr6:33602400-33608200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:33602400-33609000	Enhancers	Stomach Mucosa	stomach
11	chr6:33602400-33609400	Weak transcription	GM12878-XiMat	blood
12	chr6:33602400-33609800	Weak transcription	K562	blood
13	chr6:33602400-33617800	Weak transcription	NHLF	lung
14	chr6:33602400-33622600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:33602400-33636400	Weak transcription	HSMMtube	muscle
16	chr6:33602600-33604400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:33602600-33604600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:33602600-33604600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:33602600-33605000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:33602600-33605800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:33602600-33605800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:33602600-33606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:33602600-33606600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:33602600-33608400	Weak transcription	Esophagus	oesophagus
25	chr6:33602600-33608600	Weak transcription	Dnd41	blood
26	chr6:33602600-33609800	Weak transcription	Fetal Lung	lung
27	chr6:33602600-33610600	Weak transcription	Right Atrium	heart
28	chr6:33602600-33614800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:33602600-33619200	Weak transcription	NHDF-Ad	bronchial
30	chr6:33602600-33623400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:33602600-33624400	Weak transcription	Small Intestine	intestine
32	chr6:33602600-33625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:33602600-33625800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:33602600-33631600	Weak transcription	Osteobl	bone
35	chr6:33602800-33604800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:33602800-33606000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:33602800-33606600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:33602800-33607600	Weak transcription	HMEC	breast
39	chr6:33602800-33607800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:33602800-33608400	Weak transcription	Right Ventricle	heart
41	chr6:33602800-33608800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:33602800-33613400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:33602800-33624400	Weak transcription	Pancreas	Pancrea
44	chr6:33603000-33604800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:33603000-33606000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr6:33603000-33606000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:33603000-33624000	Weak transcription	HSMM	muscle
48	chr6:33603000-33628600	Weak transcription	Primary B cells from cord blood	blood
49	chr6:33603200-33605000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:33603200-33605200	Enhancers	Primary T helper cells PMA-I stimulated	--

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