Variant report

Variant	rs1537291
Chromosome Location	chr10:91035718-91035719
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91035256..91038390-chr10:91040352..91044173,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232110	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1041539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887939	0.91[CEU][hapmap]
rs1120669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332325	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1537290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855026	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2095050	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2104883	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2151005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934462	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4934463	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7094601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7899993	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv947683	chr10:91020881-91035791	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91020800-91037600	Weak transcription	Aorta	Aorta
2	chr10:91027200-91037400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:91027400-91036600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:91028000-91037600	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:91030600-91037600	Weak transcription	Adipose Nuclei	Adipose
6	chr10:91031600-91037600	Weak transcription	Fetal Intestine Large	intestine
7	chr10:91033400-91037600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:91033600-91037400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:91034000-91036000	Enhancers	NHLF	lung
10	chr10:91034200-91035800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:91034200-91036000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:91034200-91036000	Enhancers	Osteobl	bone
13	chr10:91034200-91036200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:91034200-91037400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:91034200-91039200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:91034400-91036000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:91034400-91036000	Enhancers	Placenta	Placenta
18	chr10:91034400-91036200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:91034400-91039800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:91034400-91043400	Enhancers	NHDF-Ad	bronchial
21	chr10:91034600-91037800	Weak transcription	Fetal Brain Male	brain
22	chr10:91034800-91036000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:91034800-91036200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:91034800-91037600	Enhancers	Hela-S3	cervix
25	chr10:91034800-91039800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:91035000-91035800	Flanking Active TSS	NHEK	skin
27	chr10:91035000-91036000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:91035000-91036000	Enhancers	Psoas Muscle	Psoas
29	chr10:91035000-91036400	Enhancers	Fetal Heart	heart
30	chr10:91035000-91037600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:91035200-91035800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:91035200-91035800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:91035200-91037200	Weak transcription	Brain Angular Gyrus	brain
34	chr10:91035200-91037200	Weak transcription	Brain Substantia Nigra	brain
35	chr10:91035200-91037400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:91035200-91037400	Weak transcription	NH-A	brain
37	chr10:91035200-91037600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:91035200-91037600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:91035200-91037600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:91035200-91037800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:91035400-91037400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:91035400-91037400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:91035400-91037400	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:91035400-91037400	Weak transcription	HSMM	muscle
45	chr10:91035400-91037600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:91035400-91037600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:91035400-91037600	Weak transcription	Small Intestine	intestine
48	chr10:91035400-91037800	Weak transcription	Left Ventricle	heart
49	chr10:91035400-91039200	Weak transcription	Esophagus	oesophagus
50	chr10:91035600-91035800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links