Variant report

Variant	rs2095051
Chromosome Location	chr10:91024554-91024555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1041539	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10887939	0.91[CEU][hapmap]
rs1120669	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1332325	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1537290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1537291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1855026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095050	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2104883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151005	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933500	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4934462	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4934463	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7094601	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7899993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv947683	chr10:91020881-91035791	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2095051	FLJ37201	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91020600-91025400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:91020600-91027800	Weak transcription	Right Ventricle	heart
3	chr10:91020600-91035000	Weak transcription	Esophagus	oesophagus
4	chr10:91020800-91037600	Weak transcription	Aorta	Aorta
5	chr10:91021000-91031000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91022400-91024600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:91022400-91026400	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:91022400-91029600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:91023000-91024800	Enhancers	Hela-S3	cervix
10	chr10:91023000-91026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:91023200-91026600	Weak transcription	A549	lung
12	chr10:91023200-91029400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:91023400-91026400	Weak transcription	Fetal Heart	heart
14	chr10:91023400-91026600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:91023600-91024600	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:91023600-91025000	Weak transcription	Brain Angular Gyrus	brain
17	chr10:91023600-91025000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:91023600-91026800	Weak transcription	Brain Anterior Caudate	brain
19	chr10:91023600-91026800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:91023600-91027000	Weak transcription	Right Atrium	heart
21	chr10:91023600-91029600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:91023800-91024800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:91023800-91026600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:91023800-91026800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:91023800-91026800	Weak transcription	Osteobl	bone
26	chr10:91023800-91035000	Weak transcription	Psoas Muscle	Psoas
27	chr10:91024000-91024800	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr10:91024000-91026600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:91024200-91024800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:91024200-91024800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:91024200-91024800	ZNF genes & repeats	Placenta	Placenta
32	chr10:91024400-91024600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:91024400-91027200	Enhancers	Brain Substantia Nigra	brain

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