Variant report

Variant	rs2104883
Chromosome Location	chr10:91019236-91019237
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1041539	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1120669	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1332325	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1537290	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1537291	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1855026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095050	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2095051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151005	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933500	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4934462	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7094601	1.00[ASN][1000 genomes]
rs7899993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv895882	chr10:91002927-91021645	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91011400-91021600	Weak transcription	Fetal Brain Male	brain
2	chr10:91011800-91020400	Weak transcription	Stomach Mucosa	stomach
3	chr10:91012000-91020400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:91012000-91021800	Weak transcription	Right Atrium	heart
5	chr10:91014400-91023400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:91016000-91020000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:91016000-91020400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:91016000-91020400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:91016400-91020200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:91016600-91020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:91016600-91020400	Weak transcription	Adipose Nuclei	Adipose
12	chr10:91017000-91020200	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:91017400-91020000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:91017800-91019800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:91017800-91020000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:91017800-91020000	Weak transcription	Brain Angular Gyrus	brain
17	chr10:91017800-91020000	Weak transcription	Brain Anterior Caudate	brain
18	chr10:91017800-91020000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:91017800-91020000	Weak transcription	Brain Substantia Nigra	brain
20	chr10:91017800-91020000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:91017800-91020000	Weak transcription	Fetal Lung	lung
22	chr10:91017800-91020400	Weak transcription	Ovary	ovary
23	chr10:91018000-91020400	Weak transcription	Fetal Stomach	stomach
24	chr10:91018400-91020400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:91018600-91020800	Enhancers	Fetal Heart	heart
26	chr10:91019000-91020000	Weak transcription	Fetal Intestine Small	intestine
27	chr10:91019000-91020200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr10:91019200-91019600	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:91019200-91020400	Weak transcription	Monocytes-CD14+_RO01746	blood

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