Variant report

Variant	rs1537992
Chromosome Location	chr13:54930043-54930044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11148304	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs12429754	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61954780	0.83[EUR][1000 genomes]
rs9563218	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9563221	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54914800-54930400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:54928200-54930800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:54928400-54930400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:54928400-54930600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:54928400-54930600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:54928400-54930600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:54928600-54930400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:54928600-54930400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:54928600-54931400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:54929000-54930200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:54929000-54930600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:54929000-54932000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr13:54929200-54930400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr13:54929200-54931400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:54929600-54932000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:54929800-54930200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:54929800-54931200	Enhancers	Adipose Nuclei	Adipose
18	chr13:54930000-54930200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:54930000-54930200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:54930000-54932000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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