Variant report

Variant	rs9563218
Chromosome Location	chr13:54931977-54931978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11148304	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12429754	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1336988	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs1537992	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61954780	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9563221	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9569033	0.84[CEU][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54929000-54932000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:54929600-54932000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:54930000-54932000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:54930400-54932600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr13:54930600-54932000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr13:54930600-54932000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:54930600-54932400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr13:54931200-54932200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:54931400-54932200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:54931600-54932000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:54931600-54932200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:54931800-54932200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr13:54931800-54932400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr13:54931800-54932400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr13:54931800-54932600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr13:54931800-54933200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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