Variant report

Variant	rs9569033
Chromosome Location	chr13:55016002-55016003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11148304	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs12429754	0.80[EUR][1000 genomes]
rs12858615	0.96[EUR][1000 genomes]
rs1336988	0.95[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes]
rs1591606	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2210930	0.80[ASN][1000 genomes]
rs61954786	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328189	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7331944	0.84[EUR][1000 genomes]
rs7335107	0.91[EUR][1000 genomes]
rs7336253	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7489856	0.91[EUR][1000 genomes]
rs9563221	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs9569023	0.93[EUR][1000 genomes]
rs9569029	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2763025	chr13:55004448-55023333	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv977246	chr13:55013586-55019919	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9569033	C13orf1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55012200-55016200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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