Variant report

Variant	rs7331944
Chromosome Location	chr13:54947014-54947015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12429754	0.83[EUR][1000 genomes]
rs12858615	0.86[EUR][1000 genomes]
rs1336988	0.82[EUR][1000 genomes]
rs1591606	0.87[EUR][1000 genomes]
rs2210930	0.87[ASN][1000 genomes]
rs61954780	0.80[EUR][1000 genomes]
rs61954786	0.85[EUR][1000 genomes]
rs7328189	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7335107	0.82[EUR][1000 genomes]
rs7336253	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7489856	0.82[EUR][1000 genomes]
rs9569023	0.88[EUR][1000 genomes]
rs9569029	0.84[EUR][1000 genomes]
rs9569033	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54942200-54948000	Weak transcription	Adipose Nuclei	Adipose
2	chr13:54946400-54947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:54946400-54947600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:54946400-54949600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:54947000-54949200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:54947000-54949200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:54947000-54949400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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