Variant report

Variant	rs1591606
Chromosome Location	chr13:54978163-54978164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11148304	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs12429754	0.83[EUR][1000 genomes]
rs12858615	0.99[EUR][1000 genomes]
rs1336988	0.89[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs2210930	0.80[ASN][1000 genomes]
rs61954780	0.80[EUR][1000 genomes]
rs61954786	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328189	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7331944	0.87[EUR][1000 genomes]
rs7335107	0.93[EUR][1000 genomes]
rs7336253	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7489856	0.93[EUR][1000 genomes]
rs9563221	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs9569023	0.96[EUR][1000 genomes]
rs9569029	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9569033	0.89[CEU][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54969000-54980800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:54969600-54982400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:54976800-54982600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:54977600-54983000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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