Variant report
| Variant | rs11148304 |
|---|---|
| Chromosome Location | chr13:55018845-55018846 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs12429754 | 0.80[EUR][1000 genomes] |
| rs12858615 | 0.96[EUR][1000 genomes] |
| rs1336988 | 0.84[CEU][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes] |
| rs1591606 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2210930 | 0.80[ASN][1000 genomes] |
| rs61954786 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7328189 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7331944 | 0.84[EUR][1000 genomes] |
| rs7335107 | 0.91[EUR][1000 genomes] |
| rs7336253 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7489856 | 0.91[EUR][1000 genomes] |
| rs9563221 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9569023 | 0.93[EUR][1000 genomes] |
| rs9569029 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9569033 | 0.94[CEU][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349795 | chr13:54892694-55252030 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2763025 | chr13:55004448-55023333 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv977246 | chr13:55013586-55019919 | Weak transcription | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
