Variant report

Variant	rs9569029
Chromosome Location	chr13:55001043-55001044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12429754	0.81[EUR][1000 genomes]
rs12858615	0.96[EUR][1000 genomes]
rs1336988	0.91[EUR][1000 genomes]
rs1591606	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61954786	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7328189	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7331944	0.84[EUR][1000 genomes]
rs7335107	0.91[EUR][1000 genomes]
rs7336253	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7489856	0.91[EUR][1000 genomes]
rs9569023	0.93[EUR][1000 genomes]
rs9569033	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54998800-55001800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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