Variant report
| Variant | rs1539491 |
|---|---|
| Chromosome Location | chr1:151458750-151458751 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 1:151458136-151461439..1:151496437-151509688 | Hela-S3 | cervix: | |
| 2 | chr1:151454493..151456172-chr1:151458137..151459889,2 | K562 | blood: | |
| 3 | chr1:151455325..151461982-chr1:151483284..151488715,8 | MCF-7 | breast: | |
| 4 | 1:151411623-151426875..1:151458136-151461439 | GM12878 | blood: | |
| 5 | 1:151458136-151461439..1:151516085-151535167 | Hela-S3 | cervix: | |
| 6 | 1:151219411-151234038..1:151458136-151461439 | Hela-S3 | cervix: | |
| 7 | 1:151458136-151461439..1:151618750-151636526 | Hela-S3 | cervix: | |
| 8 | 1:151458136-151461439..1:151512437-151516085 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000232536 | Chromatin interaction |
| ENSG00000223861 | Chromatin interaction |
| ENSG00000207606 | Chromatin interaction |
| ENSG00000143376 | Chromatin interaction |
| ENSG00000143367 | Chromatin interaction |
| ENSG00000143375 | Chromatin interaction |
| ENSG00000143442 | Chromatin interaction |
| ENSG00000252840 | Chromatin interaction |
| ENSG00000159352 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10749664 | 0.83[AMR][1000 genomes] |
| rs11204831 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1342928 | 0.83[AMR][1000 genomes] |
| rs2211436 | 1.00[AMR][1000 genomes] |
| rs4043745 | 1.00[AMR][1000 genomes] |
| rs4246523 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4970915 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4970917 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4970959 | 0.83[AMR][1000 genomes] |
| rs6587600 | 0.83[AMR][1000 genomes] |
| rs6668079 | 0.83[AMR][1000 genomes] |
| rs9661205 | 0.82[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs9803733 | 0.84[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916272 | chr1:150961809-151557253 | Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 219 gene(s) | inside rSNPs | diseases |
| 2 | nsv831581 | chr1:151289151-151478605 | Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:151458000-151458800 | Enhancers | Fetal Heart | heart |
