Variant report
| Variant | rs6668079 |
|---|---|
| Chromosome Location | chr1:151457574-151457575 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 1:151203965-151215310..1:151456766-151458136 | Hela-S3 | cervix: | |
| 2 | chr1:151456003..151457995-chr1:151478546..151480348,2 | MCF-7 | breast: | |
| 3 | chr1:151455325..151461982-chr1:151483284..151488715,8 | MCF-7 | breast: | |
| 4 | 1:151456766-151458136..1:151516085-151535167 | Hela-S3 | cervix: | |
| 5 | chr1:151449344..151451295-chr1:151455927..151458294,3 | MCF-7 | breast: | |
| 6 | chr1:151429324..151435263-chr1:151450635..151458530,13 | MCF-7 | breast: | |
| 7 | 1:151411623-151426875..1:151456766-151458136 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000143442 | Chromatin interaction |
| ENSG00000207606 | Chromatin interaction |
| ENSG00000223861 | Chromatin interaction |
| ENSG00000143375 | Chromatin interaction |
| ENSG00000143367 | Chromatin interaction |
| ENSG00000143398 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs11204831 | 0.83[AMR][1000 genomes] |
| rs1539491 | 0.83[AMR][1000 genomes] |
| rs2211436 | 0.83[AMR][1000 genomes] |
| rs4043745 | 0.83[AMR][1000 genomes] |
| rs4246523 | 0.83[AMR][1000 genomes] |
| rs4970915 | 0.83[AMR][1000 genomes] |
| rs4970917 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916272 | chr1:150961809-151557253 | Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 219 gene(s) | inside rSNPs | diseases |
| 2 | nsv831581 | chr1:151289151-151478605 | Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
