Variant report

Variant	rs2211436
Chromosome Location	chr1:151471890-151471891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10749664	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11204831	1.00[AMR][1000 genomes]
rs11204836	0.83[AFR][1000 genomes]
rs1342928	0.83[AMR][1000 genomes]
rs1539491	1.00[AMR][1000 genomes]
rs4043745	1.00[AMR][1000 genomes]
rs4246523	1.00[AMR][1000 genomes]
rs4970915	1.00[AMR][1000 genomes]
rs4970917	1.00[AMR][1000 genomes]
rs4970959	0.83[AMR][1000 genomes]
rs6587600	0.83[AMR][1000 genomes]
rs6668079	0.83[AMR][1000 genomes]
rs9661205	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
2	nsv831581	chr1:151289151-151478605	Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151467400-151475200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:151468000-151474400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:151468200-151474600	Weak transcription	Hela-S3	cervix
4	chr1:151468400-151474200	Weak transcription	HepG2	liver
5	chr1:151468400-151476600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:151468400-151482400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:151468600-151475000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:151468600-151482400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:151470200-151482400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:151471000-151472400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr1:151471000-151473200	Enhancers	Fetal Intestine Large	intestine
12	chr1:151471000-151475400	Enhancers	Duodenum Mucosa	Duodenum
13	chr1:151471000-151476600	Enhancers	Fetal Intestine Small	intestine
14	chr1:151471200-151473400	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links