Variant report

Variant	rs1540107
Chromosome Location	chr11:73032347-73032348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73024782..73027312-chr11:73031745..73033337,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28719552	1.00[AMR][1000 genomes]
rs56912720	1.00[AMR][1000 genomes]
rs57717477	1.00[AMR][1000 genomes]
rs57808420	1.00[AMR][1000 genomes]
rs58151541	1.00[AMR][1000 genomes]
rs59534715	1.00[AMR][1000 genomes]
rs60687321	1.00[AMR][1000 genomes]
rs60950530	1.00[AMR][1000 genomes]
rs73536833	1.00[AMR][1000 genomes]
rs7935288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv825993	chr11:73029209-73091929	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73024400-73037000	Enhancers	Placenta	Placenta
2	chr11:73024800-73037000	Genic enhancers	Fetal Intestine Small	intestine
3	chr11:73025400-73037200	Enhancers	Left Ventricle	heart
4	chr11:73025600-73033000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:73025600-73033400	Weak transcription	Liver	Liver
6	chr11:73025800-73038400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:73026000-73032400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:73026000-73032800	Weak transcription	A549	lung
9	chr11:73026000-73033000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:73026000-73034400	Weak transcription	Hela-S3	cervix
11	chr11:73026400-73036800	Enhancers	Fetal Heart	heart
12	chr11:73026600-73039600	Genic enhancers	Fetal Stomach	stomach
13	chr11:73026800-73032400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:73027600-73033600	Genic enhancers	HepG2	liver
15	chr11:73027800-73032400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:73027800-73033600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:73028400-73032400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:73028400-73039000	Enhancers	Rectal Smooth Muscle	rectum
19	chr11:73028600-73037000	Enhancers	Right Ventricle	heart
20	chr11:73029000-73032400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:73029200-73032800	Weak transcription	Brain Germinal Matrix	brain
22	chr11:73029600-73032800	Weak transcription	Fetal Brain Male	brain
23	chr11:73029800-73033400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:73030000-73032800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:73030400-73036200	Enhancers	Lung	lung
26	chr11:73030600-73032600	Weak transcription	Fetal Brain Female	brain
27	chr11:73030600-73032800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:73030600-73033600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:73030600-73037000	Enhancers	Ovary	ovary
30	chr11:73030800-73032600	Genic enhancers	HSMM	muscle
31	chr11:73030800-73034400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:73030800-73034800	Enhancers	Adipose Nuclei	Adipose
33	chr11:73030800-73036800	Enhancers	Primary hematopoietic stem cells	blood
34	chr11:73030800-73037000	Enhancers	Esophagus	oesophagus
35	chr11:73030800-73039000	Enhancers	Fetal Lung	lung
36	chr11:73030800-73040000	Enhancers	Right Atrium	heart
37	chr11:73031000-73032400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:73031000-73033800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:73031000-73037200	Enhancers	Colonic Mucosa	Colon
40	chr11:73031200-73032400	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr11:73031200-73032600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:73031200-73034200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:73031200-73035600	Enhancers	HMEC	breast
44	chr11:73031200-73037000	Enhancers	NHDF-Ad	bronchial
45	chr11:73031400-73032400	Enhancers	Osteobl	bone
46	chr11:73031400-73032600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:73031400-73032600	Weak transcription	Brain Substantia Nigra	brain
48	chr11:73031400-73034600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:73031400-73035200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:73031400-73036000	Enhancers	NH-A	brain

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