Variant report

Variant	rs57717477
Chromosome Location	chr11:73132609-73132610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73120640..73123438-chr11:73131254..73134143,3	MCF-7	breast:
2	chr11:73129898..73132865-chr11:73133387..73134991,2	MCF-7	breast:
3	chr11:73131690..73133889-chr11:73150341..73153257,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1540107	1.00[AMR][1000 genomes]
rs28719552	1.00[AMR][1000 genomes]
rs56912720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57808420	1.00[AMR][1000 genomes]
rs58151541	1.00[AMR][1000 genomes]
rs59534715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60687321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60950530	1.00[AMR][1000 genomes]
rs7935288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73099200-73139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
4	chr11:73118800-73137600	Weak transcription	Colonic Mucosa	Colon
5	chr11:73120800-73133000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:73120800-73133000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:73120800-73140600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:73120800-73141200	Weak transcription	Esophagus	oesophagus
9	chr11:73120800-73149000	Weak transcription	Fetal Lung	lung
10	chr11:73120800-73149800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:73120800-73150000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:73121000-73133000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:73121000-73150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:73122400-73134400	Weak transcription	NHEK	skin
15	chr11:73122400-73163200	Weak transcription	Aorta	Aorta
16	chr11:73122600-73134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:73122800-73139000	Weak transcription	Spleen	Spleen
18	chr11:73122800-73149600	Weak transcription	Gastric	stomach
19	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:73124000-73140800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:73126600-73137400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:73126600-73149400	Weak transcription	Small Intestine	intestine
23	chr11:73126800-73133000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:73126800-73137200	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:73127800-73136600	Weak transcription	Brain Angular Gyrus	brain
26	chr11:73127800-73137000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:73127800-73137400	Weak transcription	Right Ventricle	heart
28	chr11:73128000-73137400	Weak transcription	Psoas Muscle	Psoas
29	chr11:73128200-73134200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:73128200-73137400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:73128400-73134200	Weak transcription	HMEC	breast
32	chr11:73128400-73135800	Weak transcription	Brain Substantia Nigra	brain
33	chr11:73128400-73136800	Weak transcription	HSMM	muscle
34	chr11:73128400-73137200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:73128400-73137400	Weak transcription	NH-A	brain
36	chr11:73128600-73137200	Weak transcription	NHLF	lung
37	chr11:73128600-73139400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:73128600-73139400	Weak transcription	NHDF-Ad	bronchial
39	chr11:73129200-73137400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:73129400-73152400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:73129600-73132800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:73129600-73133000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:73129600-73136200	Weak transcription	GM12878-XiMat	blood
44	chr11:73129600-73140000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:73129600-73147000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:73129600-73149400	Weak transcription	Liver	Liver
47	chr11:73129600-73150000	Weak transcription	Fetal Intestine Small	intestine
48	chr11:73129800-73134400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:73129800-73141200	Weak transcription	Fetal Brain Male	brain
50	chr11:73130400-73141200	Weak transcription	Pancreas	Pancrea

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