Variant report

Variant	rs58151541
Chromosome Location	chr11:73006279-73006280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73004772..73007681-chr11:73025999..73028203,2	MCF-7	breast:
2	chr11:73006194..73007150-chr11:73071401..73072147,3	MCF-7	breast:
3	chr11:73006178..73007393-chr11:73046271..73047076,4	MCF-7	breast:
4	chr11:73002537..73005437-chr11:73005971..73007924,2	MCF-7	breast:
5	chr11:72931565..72933300-chr11:73003865..73006749,2	MCF-7	breast:
6	chr11:73006048..73010215-chr11:73011850..73015047,4	MCF-7	breast:
7	chr11:72998786..73004272-chr11:73004336..73008265,7	MCF-7	breast:
8	chr11:73004894..73006465-chr11:73028273..73031110,2	MCF-7	breast:
9	chr11:73003630..73006401-chr11:73018287..73021432,3	MCF-7	breast:
10	chr11:73006222..73006797-chr11:73018007..73018967,3	K562	blood:
11	chr11:72998137..73001549-chr11:73005628..73009315,3	MCF-7	breast:
12	chr11:73004033..73006704-chr11:73087002..73089869,3	K562	blood:
13	chr11:73006156..73007134-chr11:73371683..73372187,2	K562	blood:
14	chr11:73006175..73007098-chr11:73046057..73046907,3	K562	blood:
15	chr11:73005626..73007527-chr11:73045532..73047567,16	MCF-7	breast:
16	chr11:73004033..73007827-chr11:73087002..73090678,3	K562	blood:
17	chr11:73006231..73006757-chr11:73018027..73018977,2	MCF-7	breast:
18	chr11:73004298..73006614-chr11:73044589..73046536,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000054967	Chromatin interaction
ENSG00000110237	Chromatin interaction
ENSG00000171631	Chromatin interaction
ENSG00000257038	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1540107	1.00[AMR][1000 genomes]
rs28719552	1.00[AMR][1000 genomes]
rs56912720	1.00[AMR][1000 genomes]
rs57717477	1.00[AMR][1000 genomes]
rs57808420	1.00[AMR][1000 genomes]
rs59534715	1.00[AMR][1000 genomes]
rs60687321	1.00[AMR][1000 genomes]
rs60950530	1.00[AMR][1000 genomes]
rs73536833	1.00[AMR][1000 genomes]
rs7935288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73000600-73011200	Weak transcription	Aorta	Aorta
2	chr11:73000800-73007400	Weak transcription	Right Ventricle	heart
3	chr11:73000800-73008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
5	chr11:73001000-73006400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:73001000-73006400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:73001000-73006400	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:73001000-73006400	Weak transcription	Left Ventricle	heart
9	chr11:73001200-73010800	Weak transcription	Adipose Nuclei	Adipose
10	chr11:73002000-73006400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:73002800-73007200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:73003400-73006800	Weak transcription	Fetal Intestine Small	intestine
13	chr11:73003400-73007000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:73004000-73011600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:73004400-73006400	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:73004400-73006800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:73004400-73010800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:73004400-73011400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:73004600-73006400	Weak transcription	Spleen	Spleen
20	chr11:73005000-73006400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:73005000-73006600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:73005000-73007400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:73005200-73008000	Genic enhancers	Placenta	Placenta
24	chr11:73005800-73007000	Enhancers	Osteobl	bone
25	chr11:73005800-73007200	Enhancers	NHDF-Ad	bronchial
26	chr11:73006000-73006600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:73006000-73006600	Enhancers	A549	lung
28	chr11:73006000-73007000	Enhancers	NH-A	brain
29	chr11:73006200-73006400	Enhancers	Dnd41	blood
30	chr11:73006200-73006600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
31	chr11:73006200-73006600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
32	chr11:73006200-73006600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:73006200-73006600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:73006200-73006600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:73006200-73006600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:73006200-73006600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:73006200-73006600	Enhancers	Right Atrium	heart
38	chr11:73006200-73006600	Enhancers	HSMMtube	muscle
39	chr11:73006200-73006600	Enhancers	HUVEC	blood vessel
40	chr11:73006200-73006800	Enhancers	Fetal Heart	heart
41	chr11:73006200-73007000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:73006200-73007000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:73006200-73007000	Enhancers	Stomach Smooth Muscle	stomach
44	chr11:73006200-73007000	Enhancers	HMEC	breast
45	chr11:73006200-73007000	Enhancers	HSMM	muscle
46	chr11:73006200-73007000	Enhancers	NHEK	skin
47	chr11:73006200-73007000	Enhancers	NHLF	lung
48	chr11:73006200-73007200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:73006200-73007200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:73006200-73007200	Enhancers	Primary neutrophils fromperipheralblood	blood

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