Variant report

Variant	rs1540550
Chromosome Location	chr8:113510242-113510243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10955621	0.80[CHD][hapmap]
rs12679012	0.89[JPT][hapmap]
rs12679552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13271024	0.84[JPT][hapmap]
rs16883600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs16883751	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16883864	0.89[JPT][hapmap]
rs16892598	0.89[JPT][hapmap]
rs17744837	0.89[JPT][hapmap]
rs2853242	1.00[CEU][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap]
rs2853244	0.89[JPT][hapmap]
rs2853245	0.89[JPT][hapmap]
rs2853246	0.89[JPT][hapmap]
rs2853249	0.89[JPT][hapmap]
rs2853250	0.89[JPT][hapmap]
rs35860094	0.89[JPT][hapmap]
rs4308763	0.80[CHD][hapmap]
rs4496999	0.89[JPT][hapmap]
rs4876289	0.89[JPT][hapmap]
rs73326699	0.89[AMR][1000 genomes]
rs73328608	0.81[EUR][1000 genomes]
rs73328610	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73328634	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73328642	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73328646	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73328662	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73328675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831427	chr8:113494319-113699264	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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