Variant report

Variant	rs10955621
Chromosome Location	chr8:113388821-113388822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102371552..102373757-chr8:113387253..113389057,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10098649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10156319	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12679552	0.84[CHD][hapmap]
rs1540550	0.80[CHD][hapmap]
rs16883328	0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[MKK][hapmap]
rs16883344	0.88[CHD][hapmap];0.90[JPT][hapmap];0.84[MKK][hapmap]
rs16883355	0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs16883386	0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs16883388	0.92[CHD][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];0.83[MKK][hapmap];0.82[EUR][1000 genomes]
rs16883422	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap]
rs16883458	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16883508	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883751	0.80[CHD][hapmap]
rs28760595	0.82[EUR][1000 genomes]
rs4308763	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57156290	0.82[EUR][1000 genomes]
rs7001344	0.82[JPT][hapmap]
rs73326607	0.82[EUR][1000 genomes]
rs73326609	0.82[EUR][1000 genomes]
rs73326612	0.82[EUR][1000 genomes]
rs73326660	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73341073	0.82[EUR][1000 genomes]
rs7841225	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv891323	chr8:113359377-113394699	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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