Variant report

Variant	rs7841225
Chromosome Location	chr8:113268746-113268747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr8:113268613-113268783	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
CSMD3	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10098649	0.91[JPT][hapmap]
rs10156319	0.90[JPT][hapmap]
rs10955621	0.90[JPT][hapmap]
rs12056596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1420853	0.96[EUR][1000 genomes]
rs16883211	0.83[ASN][1000 genomes]
rs16883328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16883344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16883355	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16883386	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs16883388	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16883422	0.90[JPT][hapmap];0.82[YRI][hapmap]
rs16883458	0.91[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs16883508	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs28760595	0.92[ASN][1000 genomes]
rs41369344	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs4308763	0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs57156290	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7001344	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73326607	0.88[ASN][1000 genomes]
rs73326609	0.88[ASN][1000 genomes]
rs73326611	0.88[ASN][1000 genomes]
rs73326612	0.86[ASN][1000 genomes]
rs73326660	0.86[ASN][1000 genomes]
rs73341004	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341008	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341073	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7827543	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113264400-113269200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:113265200-113268800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:113265200-113269000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:113265400-113268800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:113266800-113268800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:113267600-113275000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:113267800-113268800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:113268600-113269200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:113268600-113271400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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