Variant report

Variant	rs16883458
Chromosome Location	chr8:113349665-113349666
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10098649	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10156319	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs10955621	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12056596	1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs16883328	0.90[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs16883344	0.90[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs16883355	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs16883386	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs16883388	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs16883422	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16883508	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1895017	1.00[CEU][hapmap]
rs28760595	0.85[ASN][1000 genomes]
rs41369344	0.82[JPT][hapmap]
rs4308763	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs57156290	0.85[ASN][1000 genomes]
rs7001344	0.83[JPT][hapmap];0.82[YRI][hapmap]
rs73326607	0.86[ASN][1000 genomes]
rs73326609	0.86[ASN][1000 genomes]
rs73326611	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73326612	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73326660	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73341004	0.82[ASN][1000 genomes]
rs73341008	0.82[ASN][1000 genomes]
rs73341073	0.84[ASN][1000 genomes]
rs7841225	0.91[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113348400-113350000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:113349400-113349800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:113349400-113350000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:113349400-113350200	Enhancers	Fetal Intestine Small	intestine
5	chr8:113349400-113350400	Enhancers	Stomach Mucosa	stomach
6	chr8:113349600-113350000	Enhancers	Dnd41	blood
7	chr8:113349600-113350200	Enhancers	Rectal Mucosa Donor 29	rectum

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