Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:113161150-113161370	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
RNU4-37P	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10098649	0.82[JPT][hapmap]
rs10101882	0.86[ASN][1000 genomes]
rs10156319	0.81[JPT][hapmap]
rs10955613	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12056596	0.80[CHB][hapmap]
rs16883097	0.90[ASN][1000 genomes]
rs16883211	0.82[ASN][1000 genomes]
rs16883328	0.80[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs16883344	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs16883355	0.91[JPT][hapmap]
rs16883386	0.90[JPT][hapmap]
rs16883388	0.91[JPT][hapmap];0.85[TSI][hapmap]
rs16883422	0.82[JPT][hapmap];0.85[TSI][hapmap]
rs16883458	0.82[JPT][hapmap]
rs28741024	0.86[ASN][1000 genomes]
rs4308763	0.82[JPT][hapmap];0.85[TSI][hapmap]
rs6469403	0.86[ASN][1000 genomes]
rs6469404	0.87[ASN][1000 genomes]
rs7001344	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs73335298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73337096	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73337099	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7841225	0.80[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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