Variant report

Variant	rs28741024
Chromosome Location	chr8:113104712-113104713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10101882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955610	0.87[ASN][1000 genomes]
rs10955613	0.96[ASN][1000 genomes]
rs12541008	0.88[ASN][1000 genomes]
rs12546646	0.81[ASN][1000 genomes]
rs12549576	0.81[ASN][1000 genomes]
rs12675200	0.81[ASN][1000 genomes]
rs16882968	0.81[ASN][1000 genomes]
rs16882998	0.87[ASN][1000 genomes]
rs16883001	0.87[ASN][1000 genomes]
rs16883061	0.88[ASN][1000 genomes]
rs16883097	0.96[ASN][1000 genomes]
rs28721348	0.83[AMR][1000 genomes]
rs41369344	0.86[ASN][1000 genomes]
rs59996303	0.88[ASN][1000 genomes]
rs6469403	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469404	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs716313	0.81[ASN][1000 genomes]
rs73331414	0.87[ASN][1000 genomes]
rs73335206	0.88[ASN][1000 genomes]
rs73335215	0.88[ASN][1000 genomes]
rs73335220	0.86[ASN][1000 genomes]
rs73335298	0.87[ASN][1000 genomes]
rs9693350	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113103800-113104800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:113103800-113105000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr8:113104200-113104800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:113104600-113105000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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