Variant report

Variant	rs16883097
Chromosome Location	chr8:113130191-113130192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10101882	0.96[ASN][1000 genomes]
rs10955610	0.83[ASN][1000 genomes]
rs10955613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12056596	0.80[CHB][hapmap]
rs12541008	0.84[ASN][1000 genomes]
rs16882998	0.83[ASN][1000 genomes]
rs16883001	0.83[ASN][1000 genomes]
rs16883061	0.84[ASN][1000 genomes]
rs16883328	0.80[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs16883344	0.80[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs16883355	0.91[JPT][hapmap]
rs16883361	1.00[MEX][hapmap]
rs16883386	0.90[JPT][hapmap]
rs16883388	0.81[CHD][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap]
rs16883392	1.00[MEX][hapmap]
rs2111428	1.00[MEX][hapmap]
rs28741024	0.96[ASN][1000 genomes]
rs41369344	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[ASN][1000 genomes]
rs4308763	0.82[JPT][hapmap];0.85[TSI][hapmap]
rs59996303	0.84[ASN][1000 genomes]
rs6469403	0.96[ASN][1000 genomes]
rs6469404	0.97[ASN][1000 genomes]
rs7001344	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs73331414	0.83[ASN][1000 genomes]
rs73335206	0.84[ASN][1000 genomes]
rs73335215	0.84[ASN][1000 genomes]
rs73335220	0.82[ASN][1000 genomes]
rs73335298	0.91[ASN][1000 genomes]
rs73337096	0.81[ASN][1000 genomes]
rs73337099	0.81[ASN][1000 genomes]
rs7841225	0.80[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv972253	chr8:113125323-113135384	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113127800-113130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links