Variant report

Variant	rs7001344
Chromosome Location	chr8:113236429-113236430
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10098649	0.83[JPT][hapmap]
rs10156319	0.82[JPT][hapmap]
rs10955621	0.82[JPT][hapmap]
rs12056596	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16883211	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16883328	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16883344	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16883355	0.92[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16883386	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16883388	0.91[JPT][hapmap]
rs16883422	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs16883458	0.83[JPT][hapmap];0.82[YRI][hapmap]
rs16883508	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs28760595	0.83[AMR][1000 genomes]
rs41369344	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4308763	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs57156290	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6469411	0.86[EUR][1000 genomes]
rs73335298	0.81[ASN][1000 genomes]
rs73337096	0.86[ASN][1000 genomes]
rs73337099	0.86[ASN][1000 genomes]
rs73341004	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73341008	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73341073	0.83[AFR][1000 genomes]
rs7836823	0.95[EUR][1000 genomes]
rs7841225	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113235200-113265400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:113235800-113238200	Weak transcription	NHEK	skin

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