Variant report

Variant	rs1540687
Chromosome Location	chr5:111246489-111246490
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10042500	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10050950	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10071922	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10072425	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1116411	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11959944	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12187919	0.86[ASN][1000 genomes]
rs12516031	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12516065	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12520308	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1389849	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1389850	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1389851	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1494592	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1507844	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs1603082	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs25790	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs35091869	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35303575	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35658682	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4296844	0.84[ASN][1000 genomes]
rs4596433	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs466033	0.82[CEU][hapmap]
rs490821	0.82[ASN][1000 genomes]
rs491101	0.84[ASN][1000 genomes]
rs4957627	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs4957977	0.80[JPT][hapmap]
rs4957978	0.80[JPT][hapmap]
rs4957984	0.81[ASN][1000 genomes]
rs497739	0.88[EUR][1000 genomes]
rs505575	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs512479	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs560063	0.82[ASN][1000 genomes]
rs586262	0.82[ASN][1000 genomes]
rs608642	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs622972	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs638424	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6594545	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs6594552	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6871530	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6898801	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6898959	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6899197	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7704226	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7716521	0.96[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs7728826	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9637887	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111246400-111247200	Enhancers	Fetal Lung	lung

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