Variant report

Variant	rs35303575
Chromosome Location	chr5:111289559-111289560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10042500	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10050950	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10059738	0.94[ASN][1000 genomes]
rs10063079	0.92[ASN][1000 genomes]
rs10071922	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10072425	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10463623	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463624	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1116411	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11241146	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12516031	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12516065	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12520308	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13169766	0.87[ASN][1000 genomes]
rs1389849	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1493453	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494585	0.99[ASN][1000 genomes]
rs1494592	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1540687	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1603082	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2047070	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2048155	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255910	0.82[ASN][1000 genomes]
rs255928	0.91[ASN][1000 genomes]
rs255929	0.88[ASN][1000 genomes]
rs255930	0.86[ASN][1000 genomes]
rs25790	0.83[EUR][1000 genomes]
rs26539	0.89[ASN][1000 genomes]
rs26540	0.88[ASN][1000 genomes]
rs26541	0.89[ASN][1000 genomes]
rs26542	0.89[ASN][1000 genomes]
rs26543	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26545	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs26546	0.83[ASN][1000 genomes]
rs26557	0.88[ASN][1000 genomes]
rs26558	0.88[ASN][1000 genomes]
rs26559	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26560	0.90[ASN][1000 genomes]
rs26561	0.91[ASN][1000 genomes]
rs26562	0.91[ASN][1000 genomes]
rs26563	0.91[ASN][1000 genomes]
rs27535	0.90[ASN][1000 genomes]
rs34924	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34928	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34930	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34931	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34941	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34942	0.91[ASN][1000 genomes]
rs35658682	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36061964	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36069145	0.95[ASN][1000 genomes]
rs36133922	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41142	0.91[ASN][1000 genomes]
rs42308	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs474807	0.93[ASN][1000 genomes]
rs490821	0.82[EUR][1000 genomes]
rs490983	0.96[ASN][1000 genomes]
rs497739	0.80[EUR][1000 genomes]
rs504582	0.94[ASN][1000 genomes]
rs505575	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs508089	0.96[ASN][1000 genomes]
rs512479	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs560063	0.84[EUR][1000 genomes]
rs593236	0.95[ASN][1000 genomes]
rs608642	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs622972	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs624694	0.93[ASN][1000 genomes]
rs638424	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6881837	0.94[ASN][1000 genomes]
rs6882073	0.93[ASN][1000 genomes]
rs6882205	0.95[ASN][1000 genomes]
rs6898801	0.82[EUR][1000 genomes]
rs6898959	0.82[EUR][1000 genomes]
rs6899197	0.85[EUR][1000 genomes]
rs712660	0.96[ASN][1000 genomes]
rs7704226	0.82[EUR][1000 genomes]
rs7710690	0.93[ASN][1000 genomes]
rs7728826	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7730997	0.97[ASN][1000 genomes]
rs7735316	0.96[ASN][1000 genomes]
rs9326846	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980888	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111285000-111290600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:111285000-111290600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:111285800-111291600	Enhancers	Osteobl	bone
4	chr5:111286000-111290200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:111286800-111290600	Weak transcription	NHEK	skin
6	chr5:111287600-111291600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:111288000-111291400	Enhancers	NH-A	brain
8	chr5:111288200-111291000	Enhancers	NHDF-Ad	bronchial
9	chr5:111288400-111289600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr5:111288400-111291000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:111288400-111292000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:111288600-111291600	Enhancers	HSMM	muscle
13	chr5:111288800-111289600	Enhancers	NHLF	lung
14	chr5:111288800-111289800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:111288800-111290000	Enhancers	Primary B cells from cord blood	blood
16	chr5:111288800-111291200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:111289400-111290000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:111289400-111290400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:111289400-111290600	Enhancers	HSMMtube	muscle
20	chr5:111289400-111291200	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links