Variant report

Variant	rs7735316
Chromosome Location	chr5:111295808-111295809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:110984520..110986634-chr5:111295470..111297519,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10045865	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10059738	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10063079	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10463623	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs10463624	0.89[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs11241145	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11241146	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs12187912	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12187919	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13169766	0.91[ASN][1000 genomes]
rs13188104	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1493453	0.96[ASN][1000 genomes]
rs1493457	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1494585	0.97[ASN][1000 genomes]
rs1994871	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2047070	0.89[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs2048155	0.83[CHB][hapmap];0.95[ASN][1000 genomes]
rs255910	0.81[ASN][1000 genomes]
rs255928	0.87[ASN][1000 genomes]
rs255929	0.84[ASN][1000 genomes]
rs255930	0.82[ASN][1000 genomes]
rs25791	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs25795	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs26539	0.88[ASN][1000 genomes]
rs26540	0.87[ASN][1000 genomes]
rs26541	0.88[ASN][1000 genomes]
rs26542	0.88[ASN][1000 genomes]
rs26543	0.84[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs26545	0.95[ASN][1000 genomes]
rs26557	0.90[ASN][1000 genomes]
rs26558	0.90[ASN][1000 genomes]
rs26559	0.86[ASN][1000 genomes]
rs26560	0.86[ASN][1000 genomes]
rs26561	0.87[ASN][1000 genomes]
rs26562	0.87[ASN][1000 genomes]
rs26563	0.87[ASN][1000 genomes]
rs27535	0.86[ASN][1000 genomes]
rs34924	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs34928	0.95[ASN][1000 genomes]
rs34930	0.95[ASN][1000 genomes]
rs34931	0.95[ASN][1000 genomes]
rs34941	0.84[ASN][1000 genomes]
rs34942	0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs34942854	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35303575	0.96[ASN][1000 genomes]
rs35658682	0.94[ASN][1000 genomes]
rs36061964	0.91[ASN][1000 genomes]
rs36069145	0.96[ASN][1000 genomes]
rs36133922	0.93[ASN][1000 genomes]
rs41142	0.87[ASN][1000 genomes]
rs42308	0.95[ASN][1000 genomes]
rs474807	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs490983	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs491101	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4957626	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4957627	0.85[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes]
rs4957992	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4957993	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4957996	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs504582	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs508089	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs586262	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs593236	0.94[ASN][1000 genomes]
rs624694	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6878696	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6881837	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6882073	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6882205	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6898198	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs712660	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7708619	0.83[EUR][1000 genomes]
rs7710690	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7712177	0.81[EUR][1000 genomes]
rs7712346	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7716521	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs7730997	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9326846	0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs980888	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111290600-111296000	Weak transcription	HSMMtube	muscle
2	chr5:111291000-111296000	Weak transcription	Fetal Heart	heart
3	chr5:111292000-111296000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:111293200-111298400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:111293600-111298200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:111293600-111298200	Enhancers	Osteobl	bone
7	chr5:111295200-111298200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:111295400-111296000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:111295600-111297800	Enhancers	NHDF-Ad	bronchial
10	chr5:111295800-111296800	Enhancers	HSMM	muscle
11	chr5:111295800-111297200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:111295800-111297200	Enhancers	NHLF	lung
13	chr5:111295800-111297800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:111295800-111297800	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links