Variant report

Variant	rs10463623
Chromosome Location	chr5:111298877-111298878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111298296..111299841-chr5:111496577..111498079,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224032	Chromatin interaction
ENSG00000238363	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10050950	0.82[EUR][1000 genomes]
rs10059738	0.94[ASN][1000 genomes]
rs10063079	0.92[ASN][1000 genomes]
rs10463624	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12520308	0.81[EUR][1000 genomes]
rs13169766	0.87[ASN][1000 genomes]
rs1493453	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494585	0.99[ASN][1000 genomes]
rs2047070	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2048155	0.95[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255910	0.82[ASN][1000 genomes]
rs255928	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs255929	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs255930	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs25790	0.81[JPT][hapmap]
rs26539	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26540	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26541	0.89[ASN][1000 genomes]
rs26542	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26543	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26545	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs26546	0.83[ASN][1000 genomes]
rs26557	0.88[ASN][1000 genomes]
rs26558	0.88[ASN][1000 genomes]
rs26559	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26560	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26561	0.91[ASN][1000 genomes]
rs26562	0.91[ASN][1000 genomes]
rs26563	0.91[ASN][1000 genomes]
rs27535	0.90[ASN][1000 genomes]
rs34924	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34928	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34930	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34931	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34941	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34942	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35303575	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35658682	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36061964	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36069145	0.95[ASN][1000 genomes]
rs36133922	0.97[ASN][1000 genomes]
rs41142	0.91[ASN][1000 genomes]
rs42308	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs466033	0.81[JPT][hapmap]
rs474807	0.93[ASN][1000 genomes]
rs490983	0.96[ASN][1000 genomes]
rs504582	0.94[ASN][1000 genomes]
rs505575	0.80[EUR][1000 genomes]
rs508089	0.96[ASN][1000 genomes]
rs512479	0.81[EUR][1000 genomes]
rs593236	0.95[ASN][1000 genomes]
rs608642	0.80[EUR][1000 genomes]
rs624694	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs638424	0.81[EUR][1000 genomes]
rs6881837	0.94[ASN][1000 genomes]
rs6882073	0.93[ASN][1000 genomes]
rs6882205	0.95[ASN][1000 genomes]
rs712660	0.96[ASN][1000 genomes]
rs7710690	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs7730997	0.97[ASN][1000 genomes]
rs7735316	0.96[ASN][1000 genomes]
rs9326846	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980888	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111297200-111299600	Enhancers	Primary B cells from cord blood	blood
2	chr5:111297400-111299200	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:111298200-111303600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:111298200-111303600	Weak transcription	Osteobl	bone
5	chr5:111298400-111303800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:111298800-111299000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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