Variant report

Variant	rs1493453
Chromosome Location	chr5:111295084-111295085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111294415..111295166-chrX:15056620..15057592,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10050950	0.81[EUR][1000 genomes]
rs10059738	0.94[ASN][1000 genomes]
rs10063079	0.92[ASN][1000 genomes]
rs10463623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463624	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12520308	0.81[EUR][1000 genomes]
rs13169766	0.87[ASN][1000 genomes]
rs1494585	0.99[ASN][1000 genomes]
rs2047070	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2048155	0.95[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255910	0.82[ASN][1000 genomes]
rs255928	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs255929	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs255930	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs25790	0.81[JPT][hapmap]
rs26539	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26540	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26541	0.89[ASN][1000 genomes]
rs26542	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26543	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26545	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs26546	0.83[ASN][1000 genomes]
rs26557	0.88[ASN][1000 genomes]
rs26558	0.88[ASN][1000 genomes]
rs26559	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26560	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26561	0.91[ASN][1000 genomes]
rs26562	0.91[ASN][1000 genomes]
rs26563	0.91[ASN][1000 genomes]
rs27535	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34924	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34928	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34930	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34931	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34941	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34942	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35303575	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35658682	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36061964	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36069145	0.95[ASN][1000 genomes]
rs36133922	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs41142	0.91[ASN][1000 genomes]
rs42308	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs466033	0.81[JPT][hapmap]
rs474807	0.93[ASN][1000 genomes]
rs490983	0.96[ASN][1000 genomes]
rs504582	0.94[ASN][1000 genomes]
rs508089	0.96[ASN][1000 genomes]
rs512479	0.80[EUR][1000 genomes]
rs593236	0.95[ASN][1000 genomes]
rs624694	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs6881837	0.94[ASN][1000 genomes]
rs6882073	0.93[ASN][1000 genomes]
rs6882205	0.95[ASN][1000 genomes]
rs712660	0.96[ASN][1000 genomes]
rs7710690	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs7730997	0.97[ASN][1000 genomes]
rs7735316	0.96[ASN][1000 genomes]
rs9326846	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980888	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111289600-111295800	Weak transcription	NHLF	lung
2	chr5:111290600-111296000	Weak transcription	HSMMtube	muscle
3	chr5:111291000-111295600	Weak transcription	NHDF-Ad	bronchial
4	chr5:111291000-111295800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:111291000-111295800	Weak transcription	Adipose Nuclei	Adipose
6	chr5:111291000-111296000	Weak transcription	Fetal Heart	heart
7	chr5:111291600-111295200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:111291600-111295800	Weak transcription	HSMM	muscle
9	chr5:111292000-111296000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:111293200-111298400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:111293600-111298200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:111293600-111298200	Enhancers	Osteobl	bone
13	chr5:111293800-111295400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:111294400-111295400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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